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A high-resolution HLA reference panel capturing global population diversity enables multi-ethnic fine-mapping in HIV host response

Publication: Journal Article

Luo, Yang, Masahiro Kanai, Wanson Choi, Xinyi Li, Kenichi Yamamoto, Kotaro Ogawa, Maria Gutierrez-Arcelus, et al. 2020. “A High-Resolution HLA Reference Panel Capturing Global Population Diversity Enables Multi-Ethnic Fine-Mapping in HIV Host Response”. Nature Genetics 53 (10): 1504-16.

Multimodally profiling memory T cells from a tuberculosis cohort identifies cell state associations with demographics, environment and disease

Publication: Journal Article

Nathan, JI Beynor, Baglaenko, Suliman, Ishigaki, Asgari, CC Huang, et al. 2021. “Multimodally Profiling Memory T Cells from a Tuberculosis Cohort Identifies Cell State Associations With Demographics, Environment and Disease”. Nat Immunol 22 (6): 781-93.

Patient-reported wellbeing and clinical disease measures over time captured by multivariate trajectories of disease activity in individuals with juvenile idiopathic arthritis in the UK: a multicentre prospective longitudinal study

Publication: Journal Article

Shoop-Worrall, Stephanie, Kimme Hyrich, Lucy Wedderburn, Wendy Thomson, Nophar Geifman, Eileen Baildam, Michael Barnes, et al. 2021. “Patient-Reported Wellbeing and Clinical Disease Measures over Time Captured by Multivariate Trajectories of Disease Activity in Individuals With Juvenile Idiopathic Arthritis in the UK: A Multicentre Prospective Longitudinal Study”. The Lancet Rheumatology 3 (2): e111-e121.

Interactions Between Genome-Wide Genetic Factors and Smoking Influencing Risk of Systemic Lupus Erythematosus

Publication: Journal Article

Cui, Jing, Soumya Raychaudhuri, Elizabeth W. Karlson, Cameron Speyer, Susan Malspeis, Hongshu Guan, Jeffrey A. Sparks, et al. 2020. “Interactions Between Genome-Wide Genetic Factors and Smoking Influencing Risk of Systemic Lupus Erythematosus”. Arthritis & Rheumatology 72 (11): 1863-71.

Ryan Agnew

Person: Technical Research Assistant II

I recently graduated from Saint Michael’s College where I majored in Biology and minored in Chemistry. During my time as an undergrad, I studied gene regulation in maize and CCAP expression in the tiger wandering spider. I am now interested in learning more about human genetics and studying the...

Siddarth Gurajala

Person: Bioinformatics Analyst

I grew up around Seattle, Washington for most of my life, and graduated from the University of Washington in 2021 with a Bachelor of Science in Biochemistry. My undergraduate work was focused on characterizing the epigenomic landscape of a human embryonic stem cell pluripotency transition, as well...

Amber Shen

Person: PhD Student at Harvard Medical School

Amber is a senior at MIT studying math from Boulder, Colorado. She is interested in methods development and understanding gene regulatory networks. Outside of doing research, Amber enjoys playing tennis, hiking, and exploring new coffee places.

Cristian Valencia

Person: Postdoctoral Fellow

I'm a postdoctoral fellow that is interested in applying genetics and genomics to understand the interindividual variability on immune-related phenotypes. I joined the Raychaudhuri lab in 2021 and I am working on integrating single cell multi-omic thechnologies to better understand the genetics and...

Dylan Kotliar

Person: Medical Resident

I’m a Medical Resident at Harvard Medical School in the Health Sciences and Technology track. I did my Ph.D in Pardis Sabeti’s lab at the Broad Institute in the Harvard Systems Biology PhD program. My Ph.D combined computational and experimental biology with field work in Nigeria, Liberia, and...

IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 lungs and inflammatory diseases with tissue inflammation

Publication: Journal Article

Zhang, Mears, Shakib, Beynor, Shanaj, Korsunsky, Nathan, AMP Consortium, Donlin, and Raychaudhuri. 2021. “IFN-γ and TNF-α Drive a CXCL10+ CCL2+ Macrophage Phenotype Expanded in Severe COVID-19 Lungs and Inflammatory Diseases With Tissue Inflammation”. Genome Med 13 (1): 64.