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113 results found

ASTD: The Alternative Splicing and Transcript Diversity database.

Publication: Journal Article

Koscielny, Gautier, Vincent Le Texier, Chellappa Gopalakrishnan, Vasudev Kumanduri, Jean-Jack Riethoven, Francesco Nardone, Eleanor Stanley, et al. 2009. “ASTD: The Alternative Splicing and Transcript Diversity Database.”. Genomics 93 (3): 213-20.

Simplified ontologies allowing comparison of developmental mammalian gene expression.

Publication: Journal Article

Kruger, Adele, Oliver Hofmann, Piero Carninci, Yoshihide Hayashizaki, and Winston Hide. 2007. “Simplified Ontologies Allowing Comparison of Developmental Mammalian Gene Expression.”. Genome Biology 8 (10): R229.

Mice and men: their promoter properties.

Publication: Journal Article

Bajic, Vladimir B, Sin Lam Tan, Alan Christoffels, Christian Schönbach, Leonard Lipovich, Liang Yang, Oliver Hofmann, et al. 2006. “Mice and Men: Their Promoter Properties.”. PLoS Genetics 2 (4): e54.

CLU: a new algorithm for EST clustering.

Publication: Journal Article

Ptitsyn, Andrey, and Winston Hide. 2005. “CLU: a New Algorithm for EST Clustering.”. BMC Bioinformatics 6 Suppl 2 (Suppl 2): S3.

FRAGS: estimation of coding sequence substitution rates from fragmentary data.

Publication: Journal Article

Swart, Estienne C, Winston A Hide, and Cathal Seoighe. 2004. “FRAGS: Estimation of Coding Sequence Substitution Rates from Fragmentary Data.”. BMC Bioinformatics 5: 8.

Transcriptome analysis of mouse stem cells and early embryos.

Publication: Journal Article

Sharov, Alexei A, Yulan Piao, Ryo Matoba, Dawood B Dudekula, Yong Qian, Vincent VanBuren, Geppino Falco, et al. 2003. “Transcriptome Analysis of Mouse Stem Cells and Early Embryos.”. PLoS Biology 1 (3): E74.

Team Science

News: February 25, 2025

Great new commentary by Caroline Shamu on team science https://catalyst.harvard.edu/news/article/tapping-into-the-core-of-research/ “Being part of the community as we figure out how to use new technologies.”

Isabel Castanho

she/her

Person: Instructor

Isabel Castanho, PhD, is an Instructor at BIDMC and Harvard Medical School. Her work centers on using single-cell and spatial genomics approaches to uncover protective mechanisms in Alzheimer’s disease, such as cognitive resilience. She completed her PhD at the University of Exeter in 2019 and...

Prediction of disease-free survival for precision medicine using cooperative learning on multi-omic data.

Publication: Journal Article

Hahn, Georg, Dmitry Prokopenko, Julian Hecker, Sharon M Lutz, Kristina Mullin, Leinal Sejour, Winston Hide, et al. 2024. “Prediction of Disease-Free Survival for Precision Medicine Using Cooperative Learning on Multi-Omic Data.”. Briefings in Bioinformatics 25 (4).

Most Pathways Can Be Related to the Pathogenesis of Alzheimer's Disease.

Publication: Journal Article

Morgan, Sarah L, Pourya Naderi, Katjuša Koler, Yered Pita-Juárez, Dmitry Prokopenko, Ioannis S Vlachos, Rudolph E Tanzi, Lars Bertram, and Winston A Hide. 2022. “Most Pathways Can Be Related to the Pathogenesis of Alzheimer’s Disease.”. Frontiers in Aging Neuroscience 14: 846902.