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Raychaudhuri, Stuart, and Altman. 2000. “Principal Components Analysis to Summarize Microarray Experiments: Application to Sporulation Time Series”. Pac Symp Biocomput, 455-66.

Kivi, Mårten, Xuemin Liu, Soumya Raychaudhuri, Russ Altman, and Peter Small. 2002. “Determining the Genomic Locations of Repetitive DNA Sequences With a Whole-Genome Microarray: IS6110 in Mycobacterium Tuberculosis”. J Clin Microbiol 40 (6): 2192-8.

Orozco, Gisela, Steve Eyre, Anne Hinks, Xiayi Ke, Wellcome Trust Case Control YEAR Consortium, Anthony Wilson, Deborah Bax, et al. 2010. “Association of CD40 With Rheumatoid Arthritis Confirmed in a Large UK Case-Control Study”. Ann Rheum Dis 69 (5): 813-6.

Frisell, Thomas, Karin Hellgren, Lars Alfredsson, Soumya Raychaudhuri, Lars Klareskog, and Johan Askling. 2016. “Familial Aggregation of Arthritis-Related Diseases in Seropositive and Seronegative Rheumatoid Arthritis: A Register-Based Case-Control Study in Sweden”. Ann Rheum Dis 75 (1): 183-9.

McLaren, Paul, Cedric Coulonges, István Bartha, Tobias L. Lenz, Aaron Deutsch, Arman Bashirova, Susan Buchbinder, et al. 2015. “Polymorphisms of Large Effect Explain the Majority of the Host Genetic Contribution to Variation of HIV-1 Virus Load”. Proc Natl Acad Sci U S A 112 (47): 14658-63.

Viatte, Sebastien, Darren Plant, Buhm Han, Bo Fu, Annie Yarwood, Wendy Thomson, Deborah Symmons, et al. 2015. “Association of HLA-DRB1 Haplotypes With Rheumatoid Arthritis Severity, Mortality, and Treatment Response”. JAMA 313 (16): 1645-56.

Donlin, Laura T., Deepak A. Rao, Kevin Wei, Kamil Slowikowski, Mandy J. McGeachy, Jason D. Turner, Nida Meednu, et al. 2018. “Methods for High-Dimensonal Analysis of Cells Dissociated from Cyropreserved Synovial Tissue”. Arthritis Research & Therapy 20 (1): 139.

Cortes, Adrian, Dafna Gladman, Soumya Raychaudhuri, Jing Cui, Lawrie Wheeler, and Matthew A. Brown. 2018. “Imputation-Based Analysis of MICA Alleles in the Susceptibility to Ankylosing Spondylitis”. Annals of the Rheumatic Diseases 77 (11): 1691-92.

Stanaway, Ian B., Taryn O. Hall, Elisabeth A. Rosenthal, Melody Palmer, Vivek Naranbhai, Rachel Knevel, Bahram Namjou‐Khales, et al. 2019. “The EMERGE Genotype Set of 83,717 Subjects Imputed to ~40 million Variants Genome Wide and Association With the Herpes Zoster Medical Record Phenotype”. Genetic Epidemiology 43 (1): 63-81.

Gutierrez-Arcelus, Maria, Nikola C. Teslovich, Alex Mola, R. B. Polidoro, A. Nathan, H. Kim, Susan K. Hannes, et al. 2019. “Lymphocyte Innateness Is Defined by Underlying Transcriptional States Reflecting a Balance Between Proliferation and Effector Functions”. Nature Communications 10 (1): 687.