Epigenomics of Retinal Development in Mice and Humans
Lonfat, Nicolas, and Connie Cepko. 2017. “Epigenomics of Retinal Development in Mice and Humans”. Neuron 94 (3): 420-23.
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Determinants of Ocular Pain Severity in Patients With Dry Eye Disease
Satitpitakul, Vannarut, Ahmad Kheirkhah, Alja Crnej, Pedram Hamrah, and Reza Dana. 2017. “Determinants of Ocular Pain Severity in Patients With Dry Eye Disease”. Am J Ophthalmol 179: 198-204.
Stabilized bubbles in the body: pressure-radius relationships and the limits to stabilization
Van Liew, and Raychaudhuri. 1997. “Stabilized Bubbles in the Body: Pressure-Radius Relationships and the Limits to Stabilization”. J Appl Physiol (1985) 82 (6): 2045-53.
Including biological literature improves homology search
Chang, Raychaudhuri, and Altman. 2001. “Including Biological Literature Improves Homology Search”. Pac Symp Biocomput, 374-83.
Using text analysis to identify functionally coherent gene groups
Raychaudhuri, Soumya, Hinrich Schütze, and Russ Altman. 2002. “Using Text Analysis to Identify Functionally Coherent Gene Groups”. Genome Res 12 (10): 1582-90.
A literature-based method for assessing the functional coherence of a gene group
Raychaudhuri, Soumya, and Russ Altman. 2003. “A Literature-Based Method for Assessing the Functional Coherence of a Gene Group”. Bioinformatics 19 (3): 396-401.
Common variants at CD40 and other loci confer risk of rheumatoid arthritis
Raychaudhuri, Soumya, Elaine Remmers, Annette Lee, Rachel Hackett, Candace Guiducci, Noel Burtt, Lauren Gianniny, et al. 2008. “Common Variants at CD40 and Other Loci Confer Risk of Rheumatoid Arthritis”. Nat Genet 40 (10): 1216-23.
Association of a single-nucleotide polymorphism in CD40 with the rate of joint destruction in rheumatoid arthritis
Linden, Michael, Anouk Feitsma, Saskia Cessie, Marlena Kern, Lina Olsson, Soumya Raychaudhuri, Ann Begovich, et al. 2009. “Association of a Single-Nucleotide Polymorphism in CD40 With the Rate of Joint Destruction in Rheumatoid Arthritis”. Arthritis Rheum 60 (8): 2242-7.
The landscape of somatic copy-number alteration across human cancers
Beroukhim, Rameen, Craig Mermel, Dale Porter, Guo Wei, Soumya Raychaudhuri, Jerry Donovan, Jordi Barretina, et al. 2010. “The Landscape of Somatic Copy-Number Alteration across Human Cancers”. Nature 463 (7283): 899-905.
Fgf8 Expression and Degradation of Retinoic Acid Are Required for Patterning a High-Acuity Area in the Retina
Silva, Susana, and Constance Cepko. 2017. “Fgf8 Expression and Degradation of Retinoic Acid Are Required for Patterning a High-Acuity Area in the Retina”. Dev Cell 42 (1): 68-81.e6.