The LIFEdb database in 2006.
Mehrle, Alexander, Heiko Rosenfelder, Ingo Schupp, Coral del Val, Dorit Arlt, Florian Hahne, Stephanie Bechtel, et al. 2006. “The LIFEdb Database in 2006.”. Nucleic Acids Research 34 (Database issue): D415-8.
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The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv integrative display of human gene expression across disparate technologies and platforms.
Tanino, Motohiko, Marie-Anne Debily, Takuro Tamura, Teruyoshi Hishiki, Osamu Ogasawara, Katsuji Murakawa, Shoko Kawamoto, et al. 2005. “The Human Anatomic Gene Expression Library (H-ANGEL), the H-Inv Integrative Display of Human Gene Expression across Disparate Technologies and Platforms.”. Nucleic Acids Research 33 (Database issue): D567-72.
Positive selection scanning of parasite DNA sequences.
Hide, Winston A, and Raphael D Isokpehi. 2004. “Positive Selection Scanning of Parasite DNA Sequences.”. Methods in Molecular Biology (Clifton, N.J.) 270: 127-50.
Molecular hallmarks of excitatory and inhibitory neuronal resilience to Alzheimer's disease.
Castanho, Isabel, Pourya Naderi Yeganeh, Carles A Boix, Sarah L Morgan, Hansruedi Mathys, Dmitry Prokopenko, Bartholomew White, et al. 2025. “Molecular Hallmarks of Excitatory and Inhibitory Neuronal Resilience to Alzheimer’s Disease.”. Molecular Neurodegeneration 20 (1): 103.
Integrative pathway analysis across humans and 3D cellular models identifies the p38 MAPK-MK2 axis as a therapeutic target for Alzheimer's disease.
Yeganeh, Pourya Naderi, Sang Su Kwak, Mehdi Jorfi, Katjuša Koler, Thejesh Kalatturu, Djuna von Maydell, Zhiqing Liu, et al. 2025. “Integrative Pathway Analysis across Humans and 3D Cellular Models Identifies the P38 MAPK-MK2 Axis As a Therapeutic Target for Alzheimer’s Disease.”. Neuron 113 (2): 205-224.e8.
GCH1 Deficiency Activates Brain Innate Immune Response and Impairs Tyrosine Hydroxylase Homeostasis.
Larbalestier, Hannah, Marcus Keatinge, Lisa Watson, Emma White, Siri Gowda, Wenbin Wei, Katjuša Koler, et al. 2022. “GCH1 Deficiency Activates Brain Innate Immune Response and Impairs Tyrosine Hydroxylase Homeostasis.”. The Journal of Neuroscience : The Official Journal of the Society for Neuroscience 42 (4): 702-16.
Whole-genome sequencing reveals new Alzheimer's disease-associated rare variants in loci related to synaptic function and neuronal development.
Prokopenko, Dmitry, Sarah L Morgan, Kristina Mullin, Oliver Hofmann, Brad Chapman, Rory Kirchner, , et al. 2021. “Whole-Genome Sequencing Reveals New Alzheimer’s Disease-Associated Rare Variants in Loci Related to Synaptic Function and Neuronal Development.”. Alzheimer’s & Dementia : The Journal of the Alzheimer’s Association 17 (9): 1509-27.
Aβ-accelerated neurodegeneration caused by Alzheimer's-associated ACE variant R1279Q is rescued by angiotensin system inhibition in mice.
Cuddy, Leah K, Dmitry Prokopenko, Eric P Cunningham, Ross Brimberry, Peter Song, Rory Kirchner, Brad A Chapman, et al. 2020. “Aβ-Accelerated Neurodegeneration Caused by Alzheimer’s-Associated ACE Variant R1279Q Is Rescued by Angiotensin System Inhibition in Mice.”. Science Translational Medicine 12 (563).
Identification of Novel Alzheimer's Disease Loci Using Sex-Specific Family-Based Association Analysis of Whole-Genome Sequence Data.
Prokopenko, Dmitry, Julian Hecker, Rory Kirchner, Brad A Chapman, Oliver Hoffman, Kristina Mullin, Winston Hide, et al. 2020. “Identification of Novel Alzheimer’s Disease Loci Using Sex-Specific Family-Based Association Analysis of Whole-Genome Sequence Data.”. Scientific Reports 10 (1): 5029.
The Pathway Coexpression Network: Revealing pathway relationships.
Pita-Juárez, Yered, Gabriel Altschuler, Sokratis Kariotis, Wenbin Wei, Katjuša Koler, Claire Green, Rudolph E Tanzi, and Winston Hide. 2018. “The Pathway Coexpression Network: Revealing Pathway Relationships.”. PLoS Computational Biology 14 (3): e1006042.