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Raj, Towfique, Manik Kuchroo, Joseph Replogle, Soumya Raychaudhuri, Barbara Stranger, and Philip De Jager. 2013. “Common Risk Alleles for Inflammatory Diseases Are Targets of Recent Positive Selection”. Am J Hum Genet 92 (4): 517-29.

Cui, Jing, Eli Stahl, Saedis Saevarsdottir, Corinne Miceli, Dorothee Diogo, Gosia Trynka, Towfique Raj, et al. 2013. “Genome-Wide Association Study and Gene Expression Analysis Identifies CD84 As a Predictor of Response to Etanercept Therapy in Rheumatoid Arthritis”. PLoS Genet 9 (3): e1003394.

Liao, Katherine, Tianxi Cai, Vivian Gainer, Sergey Goryachev, Qing Zeng-Treitler, Soumya Raychaudhuri, Peter Szolovits, et al. 2010. “Electronic Medical Records for Discovery Research in Rheumatoid Arthritis”. Arthritis Care Res (Hoboken) 62 (8): 1120-7.

Stahl, Eli, Soumya Raychaudhuri, Elaine Remmers, Gang Xie, Stephen Eyre, Brian Thomson, Yonghong Li, et al. 2010. “Genome-Wide Association Study Meta-Analysis Identifies Seven New Rheumatoid Arthritis Risk Loci”. Nat Genet 42 (6): 508-14.

Bakker, Paul, Manuel Ferreira, Xiaoming Jia, Benjamin Neale, Soumya Raychaudhuri, and Benjamin Voight. 2008. “Practical Aspects of Imputation-Driven Meta-Analysis of Genome-Wide Association Studies”. Hum Mol Genet 17 (R2): R122-8.

Raychaudhuri, Soumya, Stephan Ripke, Mingyao Li, Benjamin Neale, Jesen Fagerness, Robyn Reynolds, Lucia Sobrin, et al. 2010. “Associations of CFHR1-CFHR3 Deletion and a CFH SNP to Age-Related Macular Degeneration Are Not Independent”. Nat Genet 42 (7): 553-5; author reply 555.

Cui, Taylor, Lee, Källberg, Weinblatt, Coblyn, Klareskog, et al. 2014. “The Influence of Polygenic Risk Scores on Heritability of Anti-CCP Level in RA”. Genes Immun 15 (2): 107-14.

Brownstein, Catherine, Alan Beggs, Nils Homer, Barry Merriman, Timothy Yu, Katherine Flannery, Elizabeth DeChene, et al. 2014. “An International Effort towards Developing Standards for Best Practices in Analysis, Interpretation and Reporting of Clinical Genome Sequencing Results in the CLARITY Challenge”. Genome Biol 15 (3): R53.

Raychaudhuri, Stuart, and Altman. 2000. “Principal Components Analysis to Summarize Microarray Experiments: Application to Sporulation Time Series”. Pac Symp Biocomput, 455-66.

Kivi, Mårten, Xuemin Liu, Soumya Raychaudhuri, Russ Altman, and Peter Small. 2002. “Determining the Genomic Locations of Repetitive DNA Sequences With a Whole-Genome Microarray: IS6110 in Mycobacterium Tuberculosis”. J Clin Microbiol 40 (6): 2192-8.