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Amariuta, Luo, Knevel, Okada, and Raychaudhuri. 2020. “Advances in Genetics Toward Identifying Pathogenic Cell States of Rheumatoid Arthritis”. Immunological Reviews 294 (1): 188-204.

Deakin, Claire, John Bowes, Lisa Rider, Frederick Miller, Lauren Pachman, Helga Sanner, Kelly Rouster-Stevens, et al. 2022. “Association With HLA-DRβ1 Position 37 Distinguishes Juvenile Dermatomyositis from Adult-Onset Myositis”. Human Molecular Genetics 31 (14): 2471–2481.

Mysore, Vijayashree, Suhail Tahir, Kazuhiro Furuhashi, Jatin Arora, Florencia Rosetti, Xavier Cullere, Pascal Yazbeck, et al. 2022. “Monocytes Transition to Macrophages Within the Inflamed Vasculature via Monocyte CCR2 and Endothelial TNFR2”. J Exp Med 219 (5).

Ishigaki, Kazuyoshi, Kaitlyn Lagattuta, Yang Luo, Eddie James, Jane Buckner, and Soumya Raychaudhuri. 2022. “HLA Autoimmune Risk Alleles Restrict the Hypervariable Region of T Cell Receptors”. Nat Genet 54 (4): 393-402.

Lagattuta, Kaitlyn, Joyce Kang, Aparna Nathan, Kristen Pauken, Anna Helena Jonsson, Deepak Rao, Arlene Sharpe, Kazuyoshi Ishigaki, and Soumya Raychaudhuri. 2022. “Repertoire Analyses Reveal T Cell Antigen Receptor Sequence Features That Influence T Cell Fate”. Nat Immunol 23 (3): 446-57.

Cook, Choi, Lim, Luo, Kim, Jia, Raychaudhuri, and Han. 2021. “Accurate Imputation of Human Leukocyte Antigens With CookHLA”. Nat Commun 12 (1): 1264.

Khan, Atlas, Ning Shang, Lynn Petukhova, Jun Zhang, Yufeng Shen, Scott J. Hebbring, Halima Moncrieffe, et al. 2021. “Medical Records-Based Genetic Studies of the Complement System”. Journal of the American Society of Nephrology 32 (8): 2031-47.

Cui, Jing, Dorothee Diogo, Eli Stahl, Helena Canhao, Xavier Mariette, Jeffrey Greenberg, Yukinori Okada, et al. 2017. “Brief Report: The Role of Rare Protein-Coding Variants in Anti-Tumor Necrosis Factor Treatment Response in Rheumatoid Arthritis”. Arthritis Rheumatol 69 (4): 735-41.

Han, Buhm, Dat Duong, Jae Hoon Sul, Paul Bakker, Eleazar Eskin, and Soumya Raychaudhuri. 2016. “A General Framework for Meta-Analyzing Dependent Studies With Overlapping Subjects in Association Mapping”. Hum Mol Genet 25 (9): 1857-66.

Gutierrez-Arcelus, Maria, Stephen Rich, and Soumya Raychaudhuri. 2016. “Autoimmune Diseases - Connecting Risk Alleles With Molecular Traits of the Immune System”. Nat Rev Genet 17 (3): 160-74.