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Rossin, Elizabeth, Kasper Lage, Soumya Raychaudhuri, Ramnik Xavier, Diana Tatar, Yair Benita, International Inflammatory Bowel Disease Genetics Constortium, Chris Cotsapas, and Mark Daly. 2011. “Proteins Encoded in Genomic Regions Associated With Immune-Mediated Disease Physically Interact and Suggest Underlying Biology”. PLoS Genet 7 (1): e1001273.

Zhernakova, Alexandra, Eli Stahl, Gosia Trynka, Soumya Raychaudhuri, Eleanora Festen, Lude Franke, Harm-Jan Westra, et al. 2011. “Meta-Analysis of Genome-Wide Association Studies in Celiac Disease and Rheumatoid Arthritis Identifies Fourteen Non-HLA Shared Loci”. PLoS Genet 7 (2): e1002004.

Dastani, Zari, Marie-France Hivert, Nicholas Timpson, John Perry, Xin Yuan, Robert Scott, Peter Henneman, et al. 2012. “Novel Loci for Adiponectin Levels and Their Influence on Type 2 Diabetes and Metabolic Traits: A Multi-Ethnic Meta-Analysis of 45,891 Individuals”. PLoS Genet 8 (3): e1002607.

Jia, Xiaoming, Buhm Han, Suna Onengut-Gumuscu, Wei-Min Chen, Patrick Concannon, Stephen Rich, Soumya Raychaudhuri, and Paul Bakker. 2013. “Imputing Amino Acid Polymorphisms in Human Leukocyte Antigens”. PLoS One 8 (6): e64683.

Viatte, Sebastien, Darren Plant, and Soumya Raychaudhuri. 2013. “Genetics and Epigenetics of Rheumatoid Arthritis”. Nat Rev Rheumatol 9 (3): 141-53.

Plenge, Robert, Jeffrey Greenberg, Lara Mangravite, Jonathan Derry, Eli Stahl, Marieke Jh Coenen, Anne Barton, et al. 2013. “Crowdsourcing Genetic Prediction of Clinical Utility in the Rheumatoid Arthritis Responder Challenge”. Nat Genet 45 (5): 468-9.

Chen, Yukun, Robert Carroll, Eugenia McPeek Hinz, Anushi Shah, Anne Eyler, Joshua Denny, and Hua Xu. 2013. “Applying Active Learning to High-Throughput Phenotyping Algorithms for Electronic Health Records Data”. J Am Med Inform Assoc 20 (e2): e253-9.

Steenbergen, Raychaudhuri, Rodríguez-Rodríguez, Rantapää-Dahlqvist, Berglin, Toes, Huizinga, Fernández-Gutiérrez, Gregersen, and Helm-van Mil. 2015. “Association of Valine and Leucine at HLA-DRB1 Position 11 With Radiographic Progression in Rheumatoid Arthritis, Independent of the Shared Epitope Alleles But Not Independent of Anti-Citrullinated Protein Antibodies”. Arthritis Rheumatol 67 (4): 877-86.

Raychaudhuri, Younas, Karplus, Faerman, and Ripoll. 1997. “Backbone Makes a Significant Contribution to the Electrostatics of Alpha/Beta-Barrel Proteins”. Protein Sci 6 (9): 1849-57.

Raychaudhuri, Soumya, Jeffrey Chang, Patrick Sutphin, and Russ Altman. 2002. “Associating Genes With Gene Ontology Codes Using a Maximum Entropy Analysis of Biomedical Literature”. Genome Res 12 (1): 203-14.