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Liao, Katherine, Tianxi Cai, Guergana Savova, Shawn Murphy, Elizabeth Karlson, Ashwin Ananthakrishnan, Vivian Gainer, et al. 2015. “Development of Phenotype Algorithms Using Electronic Medical Records and Incorporating Natural Language Processing”. BMJ 350: h1885.

Yu, Sheng, Katherine Liao, Stanley Shaw, Vivian Gainer, Susanne Churchill, Peter Szolovits, Shawn Murphy, Isaac Kohane, and Tianxi Cai. 2015. “Toward High-Throughput Phenotyping: Unbiased Automated Feature Extraction and Selection from Knowledge Sources”. J Am Med Inform Assoc 22 (5): 993-1000.

Budu-Aggrey, Ashley, John Bowes, Philip Stuart, Matthew Zawistowski, Lam Tsoi, Rajan Nair, Deepak Rohit Jadon, et al. 2017. “A Rare Coding Allele in IFIH1 Is Protective for Psoriatic Arthritis”. Ann Rheum Dis 76 (7): 1321-24.

Li, Z., Raychaudhuri, and Wand. 1996. “Insights into the Local Residual Entropy of Proteins Provided by NMR Relaxation”. Protein Sci 5 (12): 2647-50.

Raychaudhuri, Stuart, Liu, Small, and Altman. 2000. “Pattern Recognition of Genomic Features With Microarrays: Site Typing of Mycobacterium Tuberculosis Strains”. Proc Int Conf Intell Syst Mol Biol 8: 286-95.

Raychaudhuri, Soumya, Jeffrey Chang, Farhad Imam, and Russ Altman. 2003. “The Computational Analysis of Scientific Literature to Define and Recognize Gene Expression Clusters”. Nucleic Acids Res 31 (15): 4553-60.

Raychaudhuri, Soumya, Robert Plenge, Elizabeth Rossin, Aylwin Ng, International Schizophrenia Consortium, Shaun Purcell, Pamela Sklar, et al. 2009. “Identifying Relationships Among Genomic Disease Regions: Predicting Genes at Pathogenic SNP Associations and Rare Deletions”. PLoS Genet 5 (6): e1000534.

Mizoguchi, Fumitaka#, Kamil# Slowikowski, Jennifer L. Marshall, Kevin Wei, Deepak A. Rao, Sook Kyung Chang, Hung N. Nguyen, et al. 2018. “Functionally Distinct Disease-Associated Fibroblast Subsets in Rheumatoid Arthritis”. Nature Communications 9 (789).

Terao, Chikashi, Yukinori Okada, Katsunori Ikari, Yuta Kochi, Akari Suzuki, Koichiro Ohmura, Keitaro Matsuo, et al. 2017. “Genetic Landscape of Interactive Effects of HLA-DRB1 Alleles on Susceptibility to ACPA(+) Rheumatoid Arthritis and ACPA Levels in Japanese Population”. Journal of Medical Genetics 54 (12): 853-58.

Slowikowski, Kamil, Kevin Wei, Michael B. Brenner, and Soumya Raychaudhuri. 2018. “Functional Genomics of Stromal Cells in Chronic Inflammatory Diseases.”. Current Opinion in Rheumatology 30 (1): 65-71.