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Raychaudhuri, Soumya, Hinrich Schütze, and Russ Altman. 2002. “Using Text Analysis to Identify Functionally Coherent Gene Groups”. Genome Res 12 (10): 1582-90.

Raychaudhuri, Soumya, and Russ Altman. 2003. “A Literature-Based Method for Assessing the Functional Coherence of a Gene Group”. Bioinformatics 19 (3): 396-401.

Raychaudhuri, Soumya, Elaine Remmers, Annette Lee, Rachel Hackett, Candace Guiducci, Noel Burtt, Lauren Gianniny, et al. 2008. “Common Variants at CD40 and Other Loci Confer Risk of Rheumatoid Arthritis”. Nat Genet 40 (10): 1216-23.

Linden, Michael, Anouk Feitsma, Saskia Cessie, Marlena Kern, Lina Olsson, Soumya Raychaudhuri, Ann Begovich, et al. 2009. “Association of a Single-Nucleotide Polymorphism in CD40 With the Rate of Joint Destruction in Rheumatoid Arthritis”. Arthritis Rheum 60 (8): 2242-7.

Beroukhim, Rameen, Craig Mermel, Dale Porter, Guo Wei, Soumya Raychaudhuri, Jerry Donovan, Jordi Barretina, et al. 2010. “The Landscape of Somatic Copy-Number Alteration across Human Cancers”. Nature 463 (7283): 899-905.

Kurreeman, Fina, Eli Stahl, Yukinori Okada, Katherine Liao, Dorothee Diogo, Soumya Raychaudhuri, Jan Freudenberg, et al. 2012. “Use of a Multiethnic Approach to Identify Rheumatoid- Arthritis-Susceptibility Loci, 1p36 and 17q12”. Am J Hum Genet 90 (3): 524-32.

Kurreeman, Fina, Katherine Liao, Lori Chibnik, Brendan Hickey, Eli Stahl, Vivian Gainer, Gang Li, et al. 2011. “Genetic Basis of Autoantibody Positive and Negative Rheumatoid Arthritis Risk in a Multi-Ethnic Cohort Derived from Electronic Health Records”. Am J Hum Genet 88 (1): 57-69.

Lee, Yvonne, Soumya Raychaudhuri, Jing Cui, Immaculata De Vivo, Bo Ding, Lars Alfredsson, Leonid Padyukov, et al. 2009. “The PRL -1149 G/T Polymorphism and Rheumatoid Arthritis Susceptibility”. Arthritis Rheum 60 (5): 1250-4.

Fonseka, Chamith Y., Deepak A. Rao, and Soumya Raychaudhuri. 2017. “Leveraging Blood and Tissue CD4+ T Cell Heterogeneity at the Single Cell Level to Identify Mechanisms of Disease in Rheumatoid Arthritis.”. Current Opinion in Immunology 49: 27-36.

Terao, Chikashi#, Boel# Brynedal, Zuomei Chen, Xia Jiang, Helga Westerlind, Monika Hansson, Per-Johan Jakobsson, et al. 2019. “Distinct HLA Associations With Rheumatoid Arthritis Subsets Defined by Serological Subphenotype”. Am J Hum Genet 105 (3): 616-24.