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Alison Barton has joined the lab!
Alison is a PhD candidate in the Harvard Medical School BIG program and is interested in studying the role of human genetic variation and population history in health and disease. Welcome, Alison!
Ronen Mukamel has joined the lab!
Ronen is an Instructor at Harvard Medical School and is interested in structural variation in human genomes and its effects on human health. Welcome, Ronen!
Whole-exome imputation paper published in Nature Genetics
Alison Barton's paper on whole-exome imputation and subsequent association and fine-mapping analyses in UK Biobank ( Barton et al. 2021 Nat Genet) is now published -- congratulations, Alison! Imputation is a statistical approach that leverages genetic data from a reference panel to enable analysis...
Two clonal hematopoiesis papers published in Nature
Our papers exploring mosaic chromosomal alterations in UK Biobank ( N~500K; Loh et al. 2020 Nature) and BioBank Japan ( N~200K; Terao et al. 2020 Nature) are now online at Nature. Highlights of these studies include discovery of several new risk loci at which acquired mutations systematically...
New preprint on learning patterns of somatic mutation in cancer
We are excited to share a new preprint, " Learning the mutational landscape of the cancer genome" (Sherman*, Yaari*, Priebe* et al.). This work, a collaboration with Bonnie Berger's group at MIT, developed a deep-learning model to predict cancer-specific neutral mutation rates at kilobase-scale...
Contrasting genetic architectures of schizophrenia and other complex diseases using fast variance-components analysis
Loh, Po-Ru, Gaurav Bhatia, Alexander Gusev, Hilary Finucane, Brendan Bulik-Sullivan, Samuela Pollack, Teresa Candia, et al. 2015. “Contrasting Genetic Architectures of Schizophrenia and Other Complex Diseases Using Fast Variance-Components Analysis”. Nat Genet 47 (12): 1385-92.
Assessing statistical significance in causal graphs
Chindelevitch, Leonid, Po-Ru Loh, Ahmed Enayetallah, Bonnie Berger, and Daniel Ziemek. 2012. “Assessing Statistical Significance in Causal Graphs”. BMC Bioinformatics 13: 35.
Assessment of chemical mixtures and groundwater effects on Daphnia magna transcriptomics
Garcia-Reyero, Natàlia, Lynn Escalon, Po-Ru Loh, Jennifer Laird, Alan Kennedy, Bonnie Berger, and Edward Perkins. 2012. “Assessment of Chemical Mixtures and Groundwater Effects on Daphnia Magna Transcriptomics”. Environ Sci Technol 46 (1): 42-50.
Genetic evidence for recent population mixture in India
Moorjani, Priya, Kumarasamy Thangaraj, Nick Patterson, Mark Lipson, Po-Ru Loh, Periyasamy Govindaraj, Bonnie Berger, David Reich, and Lalji Singh. 2013. “Genetic Evidence for Recent Population Mixture in India”. Am J Hum Genet 93 (3): 422-38.