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Alice C. Rodrigues

she/her

Person: Instructor

Alice is an Instructor at Harvard Medical School and Beth Israel Deaconess Medical Center (BIDMC) in Boston, MA. Her research focuses on the discovery and functional characterization of novel microRNAs associated with obesity and aging, with the goal of developing microRNA-based diagnostic and...

PanomiR: a systems biology framework for analysis of multi-pathway targeting by miRNAs.

Publication: Journal Article

Yeganeh, Pourya Naderi, Yue Y Teo, Dimitra Karagkouni, Yered Pita-Juárez, Sarah L Morgan, Frank J Slack, Ioannis S Vlachos, and Winston A Hide. 2023. “PanomiR: a Systems Biology Framework for Analysis of Multi-Pathway Targeting by MiRNAs.”. Briefings in Bioinformatics 24 (6).

A single-nucleus and spatial transcriptomic atlas of the COVID-19 liver reveals topological, functional, and regenerative organ disruption in patients.

Publication: Journal Article

Pita-Juárez, Yered, Dimitra Karagkouni, Nikolaos Kalavros, Johannes C Melms, Sebastian Niezen, Toni M Delorey, Adam L Essene, et al. 2022. “A Single-Nucleus and Spatial Transcriptomic Atlas of the COVID-19 Liver Reveals Topological, Functional, and Regenerative Organ Disruption in Patients.”. BioRxiv : The Preprint Server for Biology.

Reply to Neupane et al.: Replication study of AD-associated rare variants.

Publication: Journal Article

Prokopenko, Dmitry, Sarah L Morgan, Christoph Lange, Winston Hide, Lars Bertram, and Rudolph E Tanzi. 2022. “Reply to Neupane Et al.: Replication Study of AD-Associated Rare Variants.”. Alzheimer’s & Dementia : The Journal of the Alzheimer’s Association 18 (4): 863-64.

Meta-Analysis of the Alzheimer's Disease Human Brain Transcriptome and Functional Dissection in Mouse Models.

Publication: Journal Article

Wan, Ying-Wooi, Rami Al-Ouran, Carl G Mangleburg, Thanneer M Perumal, Tom Lee V, Katherine Allison, Vivek Swarup, et al. 2020. “Meta-Analysis of the Alzheimer’s Disease Human Brain Transcriptome and Functional Dissection in Mouse Models.”. Cell Reports 32 (2): 107908.

The relative resistance of children to sepsis mortality: from pathways to drug candidates.

Publication: Journal Article

Joachim, Rose B, Gabriel M Altschuler, John N Hutchinson, Hector R Wong, Winston A Hide, and Lester Kobzik. 2018. “The Relative Resistance of Children to Sepsis Mortality: From Pathways to Drug Candidates.”. Molecular Systems Biology 14 (5): e7998.

Relatively frequent switching of transcription start sites during cerebellar development.

Publication: Journal Article

Zhang, Peter, Emmanuel Dimont, Thomas Ha, Douglas J Swanson, FANTOM Consortium, Winston Hide, and Dan Goldowitz. 2017. “Relatively Frequent Switching of Transcription Start Sites During Cerebellar Development.”. BMC Genomics 18 (1): 461.

A data-driven approach links microglia to pathology and prognosis in amyotrophic lateral sclerosis.

Publication: Journal Article

Cooper-Knock, Johnathan, Claire Green, Gabriel Altschuler, Wenbin Wei, Joanna J Bury, Paul R Heath, Matthew Wyles, et al. 2017. “A Data-Driven Approach Links Microglia to Pathology and Prognosis in Amyotrophic Lateral Sclerosis.”. Acta Neuropathologica Communications 5 (1): 23.

Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus.

Publication: Journal Article

Karp, Peter D, Bonnie Berger, Diane Kovats, Thomas Lengauer, Michal Linial, Pardis Sabeti, Winston Hide, and Burkhard Rost. 2015. “Message from the ISCB: ISCB Ebola Award for Important Future Research on the Computational Biology of Ebola Virus.”. Bioinformatics (Oxford, England) 31 (4): 616-7.

CAGExploreR: an R package for the analysis and visualization of promoter dynamics across multiple experiments.

Publication: Journal Article

Dimont, Emmanuel, Oliver Hofmann, Shannan J Ho Sui, Alistair R R Forrest, Hideya Kawaji, FANTOM Consortium, and Winston Hide. 2014. “CAGExploreR: an R Package for the Analysis and Visualization of Promoter Dynamics across Multiple Experiments.”. Bioinformatics (Oxford, England) 30 (8): 1183-84.