OMERO.matlab Plugin
This is the Matlab toolbox for accessing images on the OMERO server from within Matlab.
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OMERO.ij ImageJ/Fiji Plugin
This ImageJ/Fiji plugin allows you to directly access images stored in OMERO from ImageJ/Fiji. It also allows you to save processed images, results, and ROIs back to OMERO. Instructions for installing and using the plugins can be found on the OME ImageJ Help page.
sticher
This is a utility for stiching large images and creating pyramids as a pre-processing step prior to importing images into OMERO.
OMERO.Insight for Windows
OMERO.insight is the Java client for OMERO. It is necessary for importing images into OMERO. Please always check that you are using the correct version that matches the server version. Also it is necessary to have Java installed on your Windows computer and to have the EXE4_JAVA_HOME system variable...
OMERO.Insight for Mac
OMERO.insight is the Java client for OMERO. It is necessary for importing images into OMERO. Please always check that you are using the correct version that matches the server version.
OMERO.Insight for Linux
OMERO.insight is the Java client for OMERO. It is necessary for importing images into OMERO. Please always check that you are using the correct version that matches the server version.
OMERO.py
This is the OMERO Python library.
Pathway Network Tools
PxN - Pathway Networks (2025 Release) Github PCxN - Pathway co-expression network (2018 Release) Publication GitHub Bioconductor PCxN website
Pathprint
GitHub Bioconductor Publication
Differential coexpression analysis
genes that influence expression of other genes GitHub Bioconductor